Question marks are not the [?] marker
A bare run of question marks is the transcriber's own placeholder rather than a marker anyone recognizes, and the same characters can be deliberate punctuation — so the replacement is offered for review instead of applied mechanically.
Example
[Verse]
I heard ??? tonightIn the workbench this reads: Genius marks an unclear lyric with [?], not «???».
[Verse]
I heard [?] tonightThe fix
In the workbench this finding carries one control, labelled Replace with [?]. The change is contextual, so it is previewed as a diff in your document first and applies only when you confirm it.
Source
The guideline this rule enforces, as cited on every finding it reports:
Unknown lyric marker verified Use [?] for unknown lyrics